Results for "Project Fellow"
Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-projec...1095 days ago
#Install older version of R Packages !
#Install older version of R Packages ! require(devtools) install_version("IdeoViz", version = "0.9.1", repos = "http://cran.us.r-project.org")2054 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/A...7_0 ... installing: anaconda-navigator-1.9.7-py37_0 ... installing: anaconda-projec...1549 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R...trying URL 'https://cloud.r-project.org/src/contrib/ellipsis_0.3....trying URL 'https://cloud.r-project.org/src/contrib/stringi_1.4.5...trying URL 'https://cloud.r-project.org/src/contrib/labeling_0.3....1544 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the projec...1536 days ago
- library(vcfR) vcf_file
1519 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd...ate to cryptogr aphy: openssl The OpenSSL Project is a collaborative effort to...a-navigator-1.9.7-py37_0 ... installing: anaconda-projec...1505 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...
1436 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioin...alue or use a ... suffix to tell CMake that the project does not need compatibility w...sualize [100%] Built target i-adhore Install the projec...1197 days ago
- #R is a feature rich interpretive programming language originally released in 1995. It i...d extract cd ~/workspace/bin wget https://cran.r-project.org/src/base/R-3/R-3.5.1.tar....lyr", "tidyr", "ggplot2"), repos="http://cran.us.r-projec...
817 days ago
