GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided by the Bioi...1517 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...d number of species are defined ahead of time, such as those involving Patient-Derived Xenografts (PDXs) or host-pathogen interactions. Reference protein sequence databases are used f...1514 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating...teractions, while the lack of data for a given protein-drug/chemical pair does not n...erimental, highlighted the promiscuity of both proteins and small molecules: many dr...1500 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1428 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...nerated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based cl...1453 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...roduces KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene ch...1437 days ago
1425 days ago
Predict Gene Ontology with sequences !
PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The too...1402 days ago
1366 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multipl...ucture alignment suite meant for homologous but sequentially divergent protein families which consistently r...1240 days ago