transrate: Understanding your transcriptome assembly
Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assemb...es it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemb...2143 days ago
Merqury: reference-free quality and phasing assessment for genome assemblies
...ds available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality reference. Merqury provides a...1449 days ago
nanofilt: Filtering and trimming of long read sequencing data
Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and mapping https://github.com/wdecoster/nanofilt2126 days ago
Indexcov: fast coverage quality control for whole-genome sequencing
indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomali...2096 days ago
2119 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...motivates the development of hybrid approaches that leverage the high quality of short reads to correct err...such as the ones produced by PacBio sequencing technology, using high-quality Illumina paired-end reads map...2105 days ago
SimLoRD: A read simulator for third generation sequencing reads
...r genomic DNA), sampling from an existing FASTQ file (typical for RNA), sampling from a a text file with integers (RNA), or using a fixed length Quality values and number of passes d...2103 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...r studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server for comparing multiple draft and finished-quality sequences to identify functio...2101 days ago
2089 days ago
Qualimap2: Evaluating next generation sequencing alignment data
...m-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequenci...2083 days ago