kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...dances of transcripts from bulk and single-cell RNA-Seq data, or more generally o...need for alignment. On benchmarks with standard RNA-Seq data, kallisto ...d Lior Pachter, Near-optimal probabilistic RNA-seq quantification, Nature Bi...1942 days ago
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iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1814 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
...not is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense use of RNA/intron detection tools includ...1711 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
...tomized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple use...top right corner of the page for access to unlimited private notebooks, RNA-seq datasets and alignment jo...1229 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo&...1423 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient....1549 days ago
iSeqQC: a tool for expression-based quality control in RNA sequencing
iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSe...1537 days ago
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