Results for "RNA sequencing"
Bio-Scripts
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA...2916 days ago
Perl script introduces control structures, arrays and hashes.
#!/usr/bin/env perl use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_arra...for (my $i=0; $i 'ATCGATGCT', 'RNA' => 'A...2861 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use strict; use Carp; us...$self->{'type'} = $type || ($sequence=~/u/i ? 'RNA' : 'DNA'); } return $se...$self->{'data'}; return $seq unless $self->is_RNA;...2180 days ago
- ...'/media/urbe/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBG...CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/util/..//ut...touch /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Tri...
2126 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5d...ow SAMPLES=sample_links.keys() # download yeast rna-seq data from Schurch et al,...dy rule download_all: input: expand("rnaseq/raw...
1515 days ago
- ...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g....entsSAMSpark (BETA Tool) (Internal) Examines aligned contigs from loca...ed allele fractions in pooled sequencing CalculateGenotypePosteri...
2074 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ for...p is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1558 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The...1541 days ago
Pack a perl program with their dependencies on Ubuntu !
...BOL Log in Username or email Password...Log in Username or email Password...detecting structural variants in sequencing data using genome-wide local...tween bacteria using whole-genome sequencing (WGS) data. It is particularl...1510 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to asse...T AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are...
1214 days ago
