Results for "RNA structure"
Bookmarks
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,1...It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA s...2562 days ago
Ensembl comparative genomics resources
...logies for both protein-coding and non-coding RNA genes. These resources are up...uently and have a consistent informatics infrastructure and data presentation across...views. The Ensembl comparative genomics infrastructure is extensively reused for the...3000 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Univer...uction of transcriptomes from RNA-seq data. Trinity combines th...y to process large volumes of RNA-seq reads. Trinity partitions...: Inchworm assembles the RNA-seq data into the unique sequ...ll-length transcripts for alternatively...2977 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is...ment files Visualizing data in a genome browser RNA-Seq De novo transcript dis...stering of large expression datasets (microarray or RNA-Seq)...2943 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial...re pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and...2942 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise al...paced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Anot...2937 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to su...2936 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types o...ata in this way is often required: Reads from small-RNA sequencing contain the 3&rsqu...r sequence. Poly-A tails are useful for pulling out RNA from...
2926 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genom...It's recommended for most workflows, including those for genomic resequencing, RNA-Seq a...
2918 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2916 days ago
