PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic...ignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with th...2333 days ago
2333 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq...1814 days ago
JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2330 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface...odologies have been developed and integrated to analyze and visualize genomics structure variation, gene distribution...2305 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48...2295 days ago
Genome assembly stats plotting
...ions is generated using javascript from a common (JSON) data structure, allowing toggling between alternative views, and each can be ap...gle or multiple assemblies to allow direct comparison of alternate assemblies. Tabular presentation...2270 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined usin...paring human GENCODE genes (from GENCODE v30) to lncRNAs from other species identifie...Assembly Code Transcriptome lncRNAs...861 days ago
GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2248 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and en...ly 2016 November - Uppsala2017 November - Uppsala RNA-seq course 2015 October - Up...- Uppsala2017 March - Uppsala2017 November - UppsalaRNAseq tu...2222 days ago