Comment on "List of genome announcement, notes and reporting journals"
Computational and Structural Biotechnology Journal for bioinformatics tool publication1224 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
Funding opportunities for PhD and postdocs in India https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf1252 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
Useful books for Indian scholarships https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf1252 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
IEEE Transactions on Knowledge and Data Engineering accepts bioinformatics and algorithms manuscripts https://www.computer.org/csdl/journal/tk1268 days ago
Comment on "URMAP, an ultra-fast read mapper"
...Reads must be in FASTQ format or gzip-compressed FASTQ format. It is generally faster to use uncompressed.../dev/stdout or "-" (minus sign) if you want to pipe output to another program. The -threads option specif...1282 days ago
Comment on "Sibelia: A comparative genomics tool"
...or messages that mention temporary files, try to change directory used for temporary files (see section "Directo...es are not shown on these diagrams. Genomes from the "examp...iven relatively to POSITIVE strand of the sequence. If an ins...ngle edge. Blue edges are generated from positive strand and...1283 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
....fasta This example will align three genomes and output a file /data/output/mygenomes.maf. The --directory setting is also used for storing temporary files during the run.The pr...1284 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...content comparison. Use kat comp --help to get help for the program, then create a comparison be...think contamination would look like in the kmer plot? What can the kmer graph tell you about the ploidy o...1335 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...s heavily based on too low span coverage, or reads mapping too far or too close to each other. The program will also break up contigs/s...icky though, and can’t use libraries with different read lengt...e about ten minutes. There are several checks you can do after runn...1335 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1340 days ago