3947 days ago
3946 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ysis of RNA sequencing data. Auer & Doerge, Genetics 185(2):405-16, 2010. PubMedCentral Biases in Illumina transcriptome sequencing caused by random hexamer priming. Hansen et al...3779 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...tes over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets. http://useq.sourceforge.net/cmdlnmenus.html#rnaseqsimulatorRose Random model of sequence evolution h...3737 days ago
Perl one-liner for bioinformatician !!!
...$, = " "; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers between 5 and 15.perl...rdquo;,”c”)[rand 4] } 1..20'#Generates a 20 nucleotide long random residue.perl -le 'print "a"x5...3628 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Output: tab-delimited file CHASM Description: Cancer-specific High-throughput Annotation of Somatic Mutations; Last updated May 2014; uses Random Forest Method to “disti...2909 days ago
Awesome perl frameworks, libraries and software - PART 1
...llaera/slowloris.pl - A new DOS Perl Programm colorgcc/colorgcc - colorgcc is a perl script to colorize gcc output. I'm collecting random patches and changes bbusscho...2489 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...a to the descendant taxa appearing at the terminal points of the cladogram. expressed sequence tag (EST) -- A partial coding sequence isolated at random from a cDNA library, used for...2462 days ago
PerlOneLiner for Bioinformatician
...$m = 35; ($m,$n) = ($n,$m%$n) while $n; print $a*$b/$m' # Generate 10 random numbers between 5 and 15 (exc..., 255); print $hex'perl -le '$num = "ff"; print hex $num' # Generate a random 8 character passwordperl -le...2302 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam gsnap -A sam -d hs37m r1.fq r2.fq > r12.gsnap.sam novoalign -r Random -o SAM -f r1.fq r2.fq -i 500...2182 days ago