Results for "Recursively Search"
Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.st...ri_escape( $param{query} ); _doSearch(%param); sub _doSearch { my %param = @_; my $esearch = "$param{url}/esearch.fcgi?d...die("Too many failures--giving up search."); }...2914 days ago
Blast result parser with Perl and Bioperl
...put the top N hits of each blast search result. # For each hit, the follo...strict; use warnings; use Bio::SearchIO; # Usage information die "Us...n of information for each result recursively while ( my $result = $i...# process each hit recursively while (my $hit = $res...2912 days ago
Perl script to extract lines with matching ids !!
#!/usr/bin/perl use strict; use warnings; my %patterns; #USAGE: perl extactByIds.pl Idsfile1 file2 > Result # Open file and get patterns to search for open(my $fh2,"2873 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bio...en, outdated, prune, publish, rebuild, rebuild-module-cache, remove, rm, search, show, star, starred, stars,...1173 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2523 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2138 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytec...-h --help -V --version -I --include add path to include search -L --library add path to library search --hash-seed F00F spe...1535 days ago
Installing Porechop on Ubuntu !
...input reads or a directory which will be recursively searched for FASTQ files (required)...a "none" bin) (default: False) Adapter search settings: Control how the...2104 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting obje...100 ++++++++++++++++++--------- plugins/frontend-search/README.md | 12 ++-- plugins/frontend-search/frontend-search.plugin.zsh...
2072 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo apt-...1556 days ago
