LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with sma...1726 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...rable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromos...mosome heatmaps. adjusting chromosome range or visualizing chromosome regions such as genes adding labels...1715 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...would be used for CNV calling.the mean per-region given a BED file of regions.a distribution of proportion...hresholds.A summary of mean depths per chromosome and within specified regions per chromosome.1644 days ago
MGSE: Mapping-based Genome Size Estimation
...le can be used by MGSE to calculate the coverage in provided reference regions and to calculate the total nu...subjected to the genome size estimation. Providing accurate reference regions is crucial for this genome si...1583 days ago
1567 days ago
1558 days ago
1562 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
...ools to help in the creation of such pipelines including HTML reports. Standalone applications: sequana_coverage ease the extraction of genomic regions of interest and genome covera...1557 days ago
Synteny and Rearrangement Identifier (SyRI)
...input to SyRI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (...NVs etc) within syntenic and structural rearrangements, and un-aligned regions.1474 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...e Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.12...P.Pollastro, S.Rampone (2002). HS3D, a Dataset of Homo Sapiens Splice Regions, and its Extraction Procedure...1436 days ago