1132 days ago
List of motif discovery tools !
...- Polyglutamine Database Find information about polyglutamine (polyQ) repeats. Pratt Protein motif and...ics tools at this portal site. T-REKS -- identification of Tandem REpeats in sequences with a K-meanS b...1985 days ago
Understanding reads mapping and flags !
...ds but not a representative reads. Primary Alignment and Secondary Alignment: A read may map ambiguously to multiple locations, e.g. due to repeats. Only one of the multipl...1829 days ago
3002 days ago
YASS :: genomic similarity search tool
...e transition constrained spaced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Anoth...ckground frequencies parameterizable output filter for low complexity repeats reporting of various alignme...2917 days ago
Bioinformatics approach to Boar Taint
...nal list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will be g...3781 days ago
Genome Assembly Tools and Software - PART2 !!
...embler, that explicitly identifies exact kmer repeats from the shotgun data and rem...ocalizing the assembly reduces the numbers of repeats in the assembly, allows more...angles is an ultimate tool for resolving repeats in genome assemblies. Arachn...2678 days ago
Commercial and public next-gen-seq (NGS) software
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3511 days ago
Software packages for next gen sequence analysis
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3234 days ago
3538 days ago
JRF @ NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES
...ttendant in a ICMR funded project entitled "Elucidating the strain differentiation and transmission dynamics of M. leprae through simple sequence repeats ISSR-PCR marker" 1. JRF (o...3834 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This sho...1542 days ago
Perl script to find inverted repeats !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; use Bio::Tools::Run::RepeatMasker; my $genome_file = "genome.fasta"; # read genome sequence my...417 days ago
Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome
2809 days ago
Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome
2809 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...sed on establishing benchmark large indel and structural variant calls, as well as calls in difficult genomic contexts (e.g., homopolymers/tandem repeats and difficult-to-map regions...1552 days ago