Results for "Replace"
Bio-Scripts
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...DERR $s->id(), "\t$ambig\n"; if (defined($opt_m)) { $thisSeq = ReplaceAmbiguousChar($thisSeq, $opt_m...[ATGC-]//g; $string =~ s/\s+//g; return $string; } sub ReplaceAmbiguousChar { my ($stri...2916 days ago
- ...atch in dna1 $pos = index($dna1, $pattern); print “The match position of ATG in dna1 is : $pos \n”; # replace the ATG sites with CCC $dna3 =~ s/ATG/CCC/g; print “Replaced dna3 with CCC is : $dna3 \n”...
2911 days ago
- ...stackoverflow.com/questions/6373277/git-sync-local-repo-with-remote-one This makes your local repo exactly like your remote repo. Remember to replace origin and master with the re...
1983 days ago
Find and replace in multifasta or fasta header with perl onliner
You have a fasta file and you want to replace: "|" You are told to replace that by "_" perl -i -p -e "s/\|/_/g" genome.fasta -i = inplace editing -p = loop over lines and print each line (after processing) -e = command line script1617 days ago
Installing Covid19 Environment !
...onomic databases is /home/vikas/anaconda3/envs/covid19-genepi/opt/krona/taxonomy If you would like the taxonomic data stored elsewhere, simply replace this directory with a symlin...925 days ago
Commands to Find and replace in file(s0) !
#Use SED sed -i 's/my/your/g' test.txt test2.txt test3.txt #Use FIND and SED find . -name *.txt -exec sed -i 's/my/your/g' {} \; #Use AWK awk '{sub(/{OLD_TERM}/,{NEW_TERM}); print}' {file} awk '{sub(/my/,your); print}' test.txt awk '{gsub(/i/,"a"); print}' test.txt771 days ago
Raku script to find SSRs in fastq file !
...$ssr { say " Start: $ssr, End: $ssr, Length: $ssr, Sequence: $ssr"; } } } $fh.close; } # Replace 'your_fastq_file.fastq' with...113 days ago
Python script for six frame translation of sequences !
...frame_type = "Forward" if frame > 0 else "Reverse" print(f"Frame {frame_type} {abs(frame)} Translation:\n{protein_sequence}\n") # Replace 'path/to/your/input.fasta' wi...96 days ago
