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  • Genome Assembly Tools and Software - PART2 !!

    ...this by using an array of hash lengths, a dynamic filtering of noise, a robust resolution of alternative spl...me assembly package. Unlike EULER and similar progams, Quake utilizes a robust mixture model of erroneous an...

    2699 days ago

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  • HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies

    HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read technologies or protocols, with slow or inaccura...

    Tags: HapCUT2, robust, accurate, haplotype, assembly, diverse, sequencing, technologies

    2195 days ago

  • sunbeam: A robust, extensible metagenomics pipeline

    Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations...

    Tags: sunbeam, robust, extensible, metagenomics, pipeline

    1430 days ago

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