Results for "Run"
Bio-Scripts
Bash script to download SRA file !
...oolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-file...igning. wget ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra instant/reads/ByRun/sra/SRR/SRR177/SRR1770413/SRR...1555 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...'licence()' for distribution details. Natural language support but running in an English locale R...gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -st...1545 days ago
To convert just one specific read group to fastq
...ber of datasets to subselect from the project. N=5 # Get the project run information. esearch -db sra -query $PROJECT | efetch -format runinfo > runinfo.txt # Select...1538 days ago
- ...(sort($installed_modules->directory_tree($module))) { print("removing $dir\n"); rmdir $dir or warn "could not remove $dir: $!\n"; } #Run #perl uninstall_perl_module....
1510 days ago
Installing docker for Bioinformatics on Ubuntu !
...led, so not removed Package 'runc' is not installed, so not re...55e52b890ea95e65ba581ae3429 runc: Version: 1.0.0-...COMMAND A self-sufficient runtime for containers Options...Remove one or more images run Run a command in a ne...1509 days ago
Perl script to reads and extract webpage contents !
use 5.010; use strict; use warnings; use WWW::Mechanize; my ($url) = @ARGV; die "Usage: $0 URL\n" if not $url; my $w = WWW::Mechanize->new; $w->get($url); say $w->content; #Run #jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ perl web.pl https://bioinformaticsonline.com1509 days ago
Commands to install conda in Ubuntu !
...tion. In particular, Anaconda Distribution contains re-distributable, run-time, shared -library files...llation finished. Do you wish the installer to initialize Anaconda3 by running conda init? [yes|no] [no...1507 days ago
- ...35-MT:~/Downloads/testDock$ sudo docker system prune WARNING! This will remove:...-> Using cache ---> 13519702cbe1 Step 5/12 : RUN apt-get update --yes && a...P-Pro-3335-MT:~/Downloads/testDock$ sudo docker run mydocker --.---. .-. .--...
1504 days ago
- ..."Jitendra Narayan" ---> Using cache ---> c0e65f263890 Step 5/16 : RUN apt-get clean && apt-get...-get install -y wget ---> Using cache ---> 646453255081 Step 6/16 : RUN apt-get install --yes build...
1437 days ago
- ...ightweight tool for processing biological data (FASTA/FASTQ). if you have a list of identifiers that you would like to extract from a file, you can run this command as follows: #...
1398 days ago
