Results for "SAM tool"
Blogs
String graph based genome assembly software and tools !
In graph theory, a string graph is an&nbs...ing graph’. Following are the genome assembly tools based on string graph: 1.SG...ded to contigs. BASE is a practically efficient tool for constructing contig, with...2330 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time devi...), and string graph. List of analysis tools developed for Oxford Nanopor...BWA Fast nanopore data tuned alignment tool https://github.com/lh3/bwa G.../nanopolish nanoporeVariant-detection tool for nanopore sequence datahtt...2322 days ago
BBTools for bioinformatician !
...t histogram". Filter SAM/BAM file by read length &n...ch as quality trimming at the same time.BBDuk2 can do all 4 kme...ke this:1) Run dedupe on each sample individually, so now there...compress.shNewest member of BBTools. Identify constituent k-mers...2272 days ago
Install ImageMagick from Unix Source
ImageMagick builds on a variety of Unix an...vert x86_64-pc-linux-gnu file names to toolchain format... func_convert_f...t libraries... pass_allchecking for dlltool... nochecking how to associat...es commandsconfig.status: executing libtool commandsconfig.status: execut...2148 days ago
List of motif discovery tools !
...roteins. EXPASY Proteome Tools Collection Use a collection...n protein sequences. MALISAM -- Manual ALIgnments for Struc...d kinases. MeMo -- a web tool for prediction of protein met...ple motifs. SDPpred -- A Tool for Prediction of Amino Acid...1995 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It’...elimiters, AWK is probably the right tool for the job. #!/usr/bin/a...r expression # index() does the same thing, but doesn'...like shell scripting, but to get the same output, the string # mus...
1838 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly...://github.com/lh3/miniasm 4 PBJelly scaffolding tool https://sourceforge.net/projects/pb-jelly/ 5 ARCS scaffolding tool https://github.com/bcgsc/arcs...1346 days ago
Bioinformatics tools for telomere to telomere assembly !
...mplex mixtures of amplicon targets from genomic samples to cluster and generate h...ng @Yuanyuan929)● svpack – tools for filtering, comparing, an...ormat (Aaron Wenger)● JumboDB – tool for de Bruijn graph construct...994 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for s...ny mis-assemblies can occur. Mis-assembly checking and assembly metric tools:QUAST - Quality assessment tool for genome assembly http://bi...1206 days ago
Frequently used bioinformatics tools for viral genome analysis !
...//www.R-project.org/. RATT: RATT: Rapid Annotation Transfer Tool. Otto, T. D., Dillon, G. P.,...W. S. & Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinforma...1049 days ago
