Results for "SNP"
Blogs
Computer simulation of genetic mechanism !!
...ting and Evaluating Software: Simulates complex SNP models with pure, strict epis...ization of the program GenomePop just to manage SNPs under more flexible and usef...lations http://smartpop.sourceforge.net/ SNPsim Coalescent simulatio...2968 days ago
Tools and Method for Haplotype phasing !
..., both from increasingly comprehensive and inexpensive genome-wide SNP microarrays and from ever mor...assify the alleles co-located on the same chromosome. Since sequence and SNP array data normally take the...1332 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...ormatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation...889 SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine di...3481 days ago
Software developed in pevsner lab
...Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individu...ritance Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze SNP Da...3492 days ago
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Files
Bioinformatics approach to Boar Taint
...2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy...and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was prepared after filtering...3783 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...n currently be used to create accurate pairwise SNP phasings.Given a set of align...t that is designed for genomes that are rich in SNPs and other types of polymorph...o obtain neighboring regions of the segment for SNP discovery and linkage disequi...2679 days ago
Top-level pages
List of pharmacogenomics companies worldwide
...com www.mftservices.de www.ncgr.org www.ramaciotti.unsw.edu.au www.rikengenesis.jp www.SABiosciences.com www.sequensysbio.com www.servicexs.com www.snp-genetics.com www.takara-bio.c...3915 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...25(14):1754-60, 2009. PubMedCentral Improving SNP discovery by base alignment q...ome alignment & comparisons] Searching for SNPs with cloud computing. Langme...igest RADseq: an inexpensive method for de novo SNP discovery and genotyping in m...3773 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...ay announcing completion of the “Ovine Infinium® HD SNP BeadChip”, a high definition SNP chip for ship genome. The Ovi...ly spaced probes that target single nucleotide polymorphisms (SNPs). More than 18,000 of these...3890 days ago
- ...od crisis and climate change. The recent research provides an unmatched resource to respond to these challenges by identifying a large high-quality SNP and indel data set in diverse...
3891 days ago
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Opportunity posts
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
...idates must have: a PhD degree in statistics, biostatistics or bioinformatics, extensive experience in analyzing high-dimensional data (microarray, SNP, CNVs) and of validation appr...3914 days ago
Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
...Dutt 2. JRF IRB Project ACTREC Funds Dr. Amit Dutt 3. RA Defining the cancer genome of Head and Neck Squamous Cell Carcinoma (HNSCC) with SNP arrays and next generation se...3835 days ago
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Bio-Scripts
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadin...ing GATK jar /media/jitendra/OSDisk/SNP/gatk-4.0.2.1/gatk-package-4.0...level=1 -jar /media/jitendra/OSDisk/SNP/gatk-4.0.2.1/gatk-package-4.0...and genotyping for short variants (SNPs, SNVs and Indels) Combi...
2069 days ago
- ...(scalar(@s) >= 3){$c++;}} print "$c\n";'` echo "num bp: "$NUM_BP NUM_SNP=`cat $1 |grep -v "#" | awk -F...$4); } else { SUM+=length($4)-length($5)}} END { print SUM}'` echo "num snp: "$NUM_SNP perl -e 'chomp(...
1598 days ago
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Tags
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar papers: http://online.liebertpub.com/doi/pdf/10.1089/cm...Tags: Sequencing, short reads mapping, SNP, GSNAP, BWA, Bowtie, BWA, mrsFAST
3890 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acceptable in a variety of formats) much each correspond to a single population, with variants called relative to a...
Tags: Bioinformatics, SNP, SNPGenie, Perl
2586 days ago
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Comments
Comment on "Coronavirus Resources !"
SARS-CoV-2 SNP Calling pipeline https://github.com/DamienFr/CoV-homoplasy1452 days ago
Comment on "Biological databases !"
NCBI released a set of GATK-specific dbSNP VCF's, with the "chr" attached. Those can be accessed at ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/.1537 days ago
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