Results for "Scaffolding"
Blogs
String graph based genome assembly software and tools !
...cient tool for constructing contig, with significant improvement in quality for long NGS reads. It is relatively easy to extend BASE to include scaffolding. 5. Fermi https://...2322 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...alignment toolhttp://last.cbrc.jp/ LINKSSoftware tool for long read scaffolding https://github.com/warrenlr/L...n software https://github.com/arq5x/poretools SSPACE-LongReadGenome scaffolding tool http://www.baseclear.com...2314 days ago
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Bookmarks
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomi...3568 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with...3218 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
... (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, t...s a software for assembling and scaffolding Illumina sequencing data of m...assemblies. SSPACE 3.0 – Scaffolding pre-assembled Contigs using P...d Mate-Pair reads Filtering and ScaffoldingSLIQ , a set of simple li...2679 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...TransPS 1.1.0 – Transcriptome Post Scaffolding TransPS is a pipeline for...tructed contigs to more completeness ones.2.Scaffolding. We use paired-end reads to c...tion ScaffoldScaffolder is a stand-alone scaffolding algorithm which was designed...2679 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...onsensus (OLC) approach without the necessity of an error correction stage (uses minimap) Software (C) https://github.com/lh3/miniasm LINKS Scaffolding genome assembly with error-co...2365 days ago
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Wire posts
Bio-Scripts
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_help...2302 days ago
- ...nityrnaseq-Trinity-v2.6.6/trinity_out_dir/both.fa -min_contig_length 200 -min_glue 2 -glue_factor 0.05 -min_iso_ratio 0.05 -t 40 -k 24 -kk 48 -scaffolding /home/urbe/Tools/trinityrnase...
2121 days ago
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Tags
- SSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)
Tags: SSAPCE, LongREads, SSPACE-Longreads, Scaffolding, error, getopts, perl, genome
2145 days ago
Comments
Comment on "Software packages for next gen sequence analysis"
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data MaGuS (Map-GUided Scaffolding) is a scaffolder and a refere...2902 days ago
