Results for "Scores"
Blogs
Various scholarships around the world !!
...ing Countries’ StudentsScholarship Provider: International Society of NephrologyEligible Students: The candidates with the highest scores will be granted a fellowship....2814 days ago
BBTools for bioinformatician !
...BMap package automatically changes q-scores of Ns that are above 0 to 0 and called bases with q-scores below 2 to 2, since occasiona...me only (this considers the combined scores of read pairs - pairs are alw...d 4000) also using quantized quality scores, I developed it for recalibra...2267 days ago
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Bookmarks
- ...igs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among...
1089 days ago
- ...is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file...
2995 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...AP can map reads with or without error probability information (quality scores) and supports paired-end read.... The quality trimming portion of lucy makes use of phred quality scores, such as those produced by ma...2682 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...ics, including changes in solvent accessible surface area, energy-based scores, and sequence conservation, a...ieve a significantly higher mean Matthews Correlation Coefficient (MCC) scores and Binding-site Distance Tes...3741 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...impact predictions, evolutionary conservation scores and pathogenicity Supports a...EST, SNVGet; “CRAVAT provides predictive scores for germline variants, somati...file), deletion genes file (text file), Gistic Scores file, Segmented copy number (...2905 days ago
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Wire posts
News
- ...st public release(9.12). Major user-visible changes include: # Modeller now includes a variety of SOAP (statistically optimized atomic potential) scores for assessing proteins, loops...
3731 days ago
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
...matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring scheme (instead of using fixed MATCH and MISMATCH scores we will use values read from...2902 days ago
Installing Porechop on Ubuntu !
...sent (default: 10000) --scoring_scheme SCORING_SCHEME Comma-delimited string of alignment scores: match,...2103 days ago
- +3 more Bio-Scripts
Tags
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site in an assembled genome to calculate a quality sc...Tags: Referee, Genome, assembly, quality, scores, ngs
2005 days ago
Comments
Comment on "A quick guide to Phred scaling"
...stem for representing the quality scores of sequencing reads. It is us...Phred scaling: Phred quality scores: Phred quality scores are rep...score encoding: The Phred quality scores are typically encoded in the...stem for representing the quality scores of sequencing reads, where hi...412 days ago
Comment on "Does anyone have Nanopore latest updates?"
...the current generation NGS boxes. Nanopores comes at 1/1000X prices while we all pay 5X and 10X for other boxes. I will post raw data and quality scores shortly....3269 days ago
