Comment on "Installing Porechop on Ubuntu !"
➜ MyPassport porechop -i /media/urbe/MyDDrive/ONTdata/allONT/allONT.fasta -t 40 > ONT_choppedNcorrected.fa Loading reads/media/urbe/MyDDrive/ONTdata/allONT/allONT.fas...2119 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len...2136 days ago
Comment on "Run miniasm assembler on nanopore reads !"
urbe@urbo214b[allONT] minimap2 -xava-ont both.fastq both.fastq -t20 -X > AONT.paf [][M::mm_idx_gen::107.693*1.96] collected minimizers[M::mm_idx_gen::117.963*3.34] sor...2294 days ago
Comment on "Worldwide funding agencies to fund your bioinformatics research !!"
The Arturo Falaschi ICGEB Fellowship Programmes for PhD, PostDoc and Short term courses The Arturo Falaschi ICGEB Fellowships programme offers long and short-t...2748 days ago
Comment on "Worldwide funding agencies to fund your bioinformatics research !!"
Bioinformatics funding for Japan Promoting science and technology is a key engine to materialize a bright future of Asia and it is vitally important to enhance the excha...2791 days ago
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
A Fugu–Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes http://nar.oxfordjournals.org/content/32/8/2618.short3208 days ago
3601 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
There are several other softwares Eland: http://illumina.ucr.edu/illumina_docs/Velvet:http://www.ebi.ac.uk/~zerbino/velvet/Maq (Mapping and Assembly with Quality): http:...3635 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3661 days ago