Results for "Single Cell"
Blogs
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration of the command line, which you may not have...vs_human_blast_results.tab \ -evalue 1e-5 \ -outfmt 7 I broke the long sing...2256 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides interactive, configurable and elegant graphics visualization of the human ch...(like gene names or total genes mapped on a location) or can view the magnified sing...2152 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trinity-v2.6.6 ➜ cd trinityrnaseq-Tr...mes (separated by commas, no spaces) # # Or, if unpaired reads: # --single :sing...
2145 days ago
List of motif discovery tools !
...translational modifications and find potential single amino acid substitutions in p...ns. NetworKIN -- a resource for exploring cellular phosphorylation networks...ScanSite 2.0 -- Proteome-wide prediction of cell signaling interactions using...2005 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24...= movie Time of Run Start (yymmdd_hhmmss) Instrument Serial Number SMRT Cell Barcode Set Number (a.k.a. "...2001 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two core...xThreads=2) and you would like to disable cluster option, since we compute on a sing...1956 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include direction...1848 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It’s like flex/lex, from the command-line, perfec...lso an output field separator (OFS) that you can assign, which # defaults to a sing...
1847 days ago
- This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/ The content of the...ion and are briefly described below. Each of the files store one record in the sing...
1560 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/Paci...8 PILON error correction https://github.com/broadinstitute/pilon/wiki 9 BUSCO sing...1355 days ago
