Protocol for De novo Genome Assembly using Illumina Reads
...ttp://sourceforge.net/apps/mediawiki/image2/index.php?title=Main_Page Genome visualisers and editors:Artemis - http://www.sanger.ac.uk/resources/software/artemis/IGV - http://www.broa...1198 days ago
Run bash script in Perl program !
...t is used, for example, in the development of source codes, standalone software/tools, and algorithms in bioi...e fact that Python is commonly favoured over Perl, some bioinformatics software, such as the standalone versi...630 days ago
Ancient whole genome duplication (WGD) detection tools !
...nnot be installed directly with bioconda at present, so it is a little troublesome to install, because it depends on a lot of software. wgd depends on the following software BLASTMCLMUSCLE/MAFFT/PRANKPA...1149 days ago
Frequently used bioinformatics tools for viral genome analysis !
...enomic sequence classification using exact alignments. Wood, D. E. & Salzberg, S. L. Genome Biol. 15, R46 (2014). MUMmer: Versatile and open software for comparing large genomes....1040 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment...870 days ago
List of comparative genomics resources !
...ants. CoCoa -- COefficient of COAncestry software Find information about the a...enomics of prokaryotes made easy A web-based software/database system aimed at an i...SnoopCGH -- Comparative Genomic Hybridization software Visualize and explore compar...670 days ago
Bioinformatics tools to explore SSRs in genomes !
...can also filter out low complexity regions. SciRoKo: SciRoKo is a software tool that can identify SSRs i...various organisms. QDD: QDD (Quick Detection of Duplication) is a software tool that can identify SSRs i...418 days ago
Common methods to discover tandem repeats
...peats in genomes: Tandem Repeat Finder: Tandem Repeat Finder is a software tool that identifies tandem r...r, and overall composition. RepeatMasker: RepeatMasker is another software tool that can identify tandem...416 days ago
Calculate the significance of the difference between two trends
...t a significant difference. It's important to note that the specific details of each step will depend on the type of test you choose and the software you use to perform the analys...411 days ago
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