Results for "Software Architecture"
Top-level pages
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches...reversed 180°), still reads CGAAGC. The European Molecular Biology Open Software Sui...2214 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. T...ants. bowtie: widely used, open source alignment software for aligning raw sequence rea...e Phred refers to the original Phred base-calling software, wh...
2872 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads...revolutionary bioinformatics software for automatic DNA sequence as...cs. Rnnotator is an automated software pipeline that generates trans...ome Data. Trans-ABySS is a software pipeline for analyzing ABySS-...2689 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl&nbs...p;- Collection of plugins for softwares compatible with Nagios plugi...- SailAlign is an open-source software toolkit for robust long speec.../blawd - Simple Blogging Software in Perl, similar to blosxome...2492 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq dat...special type of k-mers) Software (C++) http://www.csbio.unc.e...from NGS data (k-mer based) Software (Python) https://github.com/...PacBio reads, draft genomes) Software (Perl) https://github.com/wa...2374 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&n...gle-cell RNA-seq data with Bioconductor SCell: single-cell RNA-seq analysis software ht...2354 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED databa...lity of genome assemblies created via an assembly software. PAGIT compiled four tools: (...sequences and; (iv) RATT for help annotation. The software was...2335 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze...y Chemical kinetics stochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin...algorithms https://www.broadinstitute.org/software/spe...2291 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but als...ttp://www.bcgsc.ca/platform/bioinfo/software/abyss-explorer BamView Geno...http://www.sanger.ac.uk/resources/software/artemis/ DNannotator ...b.ucsd.edu/star/browser SVA Software for...2287 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as t...ITE http://jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.jane...par http://www.eecs.wsu.edu/~ananth/software.htm MAK http://wesslerclust...TFinder http://bioinf.dimi.uniud.it/software/sof...2277 days ago
