Computer simulation of genetic mechanism !!
...the execution output. Simulation embodies the principle of ``learning by doing'' --- to learn about the system we must first build a model of some sort and then operate the model. T...2985 days ago
BBTools for bioinformatician !
...rs that occurred at least 10 times, in a 2-column format that is easy to sort in Excel. Code: ACC...Calculating coverage of the genome Program will take sam or bam, sorted or unsorted. Code: $ pi...2281 days ago
List of Bioinformatics Vacancy, Jobs, Opportunity websites
Bioinformatics cover wide area of biology, and indulge in almost all sort of science related work. Bioinformatician give strong emphasis on open access to biological information as w...3643 days ago
WGS Celera Assembler version 8.3rc2
...1:40 fastqSimulate-rwxrwxr-x 1 urbe urbe 121K Apr 10 11:40 fastqSimulate-sort-rwxrwxr-x 1 urbe urbe 246K Ap...lapStoreIndexer-rwxrwxr-x 1 urbe urbe 48K Apr 10 11:41 overlapStoreSorter-rwxrwxr-x 1 urbe urbe 604K...2592 days ago
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Linux Sort Commands for Bioinformatics
...erl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come...ort stands at the top. It can sort a 20Gb file with less than 2G...nd informationIf you have any sort commands you'd like to share,...3637 days ago
Awesome perl frameworks, libraries and software - PART 2
...hich can contain lot of template-related errors or warnings difficult to sort out. klenin/cats-main -...ebian repositories jjn1056/Perl-Catalyst-AsyncExample - maybe some sort of async with catalyst hpros...2504 days ago
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Atlas of ancient inter-ethnic group !!!
...,000 years) with an ease.The study published the findings and presented with an interactive map. http://admixturemap.paintmychromosomes.com/ These sort of genomic study have some li...3743 days ago
Research Associate Bioinformatician @ University of Bristol
...il: anne.walsh@bristol.ac.uk. Apply at http://www.bris.ac.uk/jobs/find/details.html?nPostingID=3639&nPostingTargetID=13346&option=28&sort=DESC&respnr=1&ID=Q50F...3185 days ago
Perl Poem: Parse it in both Perl and English!
...l me. do something if distressed; @dawn, dance;@evening, sing;read (books,$poems,stories) until peaceful;study if able; write me if-you-please; sort your feelings, reset goals, s...3929 days ago
2926 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...Bio::SeqIO->new(-file => $file, -format => $format); while (my $seq = $seqio_obj->next_seq()) { push(@seqArr, $seq); } } #@seqArr = sort { $a->id() cmp $b->id() } @se...2924 days ago
Linux Sort Commands for Bioinformatics
Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space efficiency GNU sort stands at the top. It can sort a 20Gb file with less than 2Gb memory. It is not trivial to implement so...Tags: Bioinformatics, Computational Biology, Linux, Sort, Example
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Comment on "Far Manager Commands and Links !"
...F1- show / hide the left panel F2- show / hide right panel F3- sort by file name F4- sort by extension F5- sort by rec...F6- sort by size F7- do not sort F8- sort by creation time F9- sort by access time F10- sort by...950 days ago
Comment on "Nanopolis: polish a genome assembly"
...e draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtool...variants --consensus -o polished.{1}.vcf -w {1} -r reads.fa -b reads.sorted.bam -g draft.fa -t 4 --min-...2109 days ago