Results for "Sort"
Blogs
Computer simulation of genetic mechanism !!
...the execution output. Simulation embodies the principle of ``learning by doing'' --- to learn about the system we must first build a model of some sort and then operate the model. T...2980 days ago
BBTools for bioinformatician !
...rs that occurred at least 10 times, in a 2-column format that is easy to sort in Excel. Code: ACC...Calculating coverage of the genome Program will take sam or bam, sorted or unsorted. Code: $ pi...2276 days ago
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List of Bioinformatics Vacancy, Jobs, Opportunity websites
Bioinformatics cover wide area of biology, and indulge in almost all sort of science related work. Bioinformatician give strong emphasis on open access to biological information as w...3638 days ago
WGS Celera Assembler version 8.3rc2
...1:40 fastqSimulate-rwxrwxr-x 1 urbe urbe 121K Apr 10 11:40 fastqSimulate-sort-rwxrwxr-x 1 urbe urbe 246K Ap...lapStoreIndexer-rwxrwxr-x 1 urbe urbe 48K Apr 10 11:41 overlapStoreSorter-rwxrwxr-x 1 urbe urbe 604K...2587 days ago
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Files
- ...429.488 sec[E::hts_open_format] Failed to open file temporarySamsamtools sort: can't open "temporarySam": N.../usr/local/bin/samtools view -S -h -b -F 0x4 - | /usr/local/bin/samtools sort -@ 20 -no - temporarySam >...
2156 days ago
Pages
Linux Sort Commands for Bioinformatics
...erl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come...ort stands at the top. It can sort a 20Gb file with less than 2G...nd informationIf you have any sort commands you'd like to share,...3632 days ago
Awesome perl frameworks, libraries and software - PART 2
...hich can contain lot of template-related errors or warnings difficult to sort out. klenin/cats-main -...ebian repositories jjn1056/Perl-Catalyst-AsyncExample - maybe some sort of async with catalyst hpros...2499 days ago
Top-level pages
- ...cian/ biological programmers need to expertise in any one one the programming language. However, sometime one language are not enough to handle all sort of biological needs, which co...
3953 days ago
- ...Each algorithm has a goal, for example, the purpose of the Quick Sort algorithm is to sort data in ascending or descendi...into another problem. A simple example: finding the median in an unsorted list is first translating t...
3951 days ago
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Wire posts
News
Atlas of ancient inter-ethnic group !!!
...,000 years) with an ease.The study published the findings and presented with an interactive map. http://admixturemap.paintmychromosomes.com/ These sort of genomic study have some li...3738 days ago
Opportunity posts
Research Associate Bioinformatician @ University of Bristol
...il: anne.walsh@bristol.ac.uk. Apply at http://www.bris.ac.uk/jobs/find/details.html?nPostingID=3639&nPostingTargetID=13346&option=28&sort=DESC&respnr=1&ID=Q50F...3180 days ago
Fun
Perl Poem: Parse it in both Perl and English!
...l me. do something if distressed; @dawn, dance;@evening, sing;read (books,$poems,stories) until peaceful;study if able; write me if-you-please; sort your feelings, reset goals, s...3924 days ago
Bio-Scripts
- ...r) || die "Cannot change to $myDir: $!"; # Go to $myDir opendir(DIR, ".") || die "Cannot open .: $!"; # Open $myDir foreach $seqFile (sort readdir(DIR)) { if ($se...
2921 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...Bio::SeqIO->new(-file => $file, -format => $format); while (my $seq = $seqio_obj->next_seq()) { push(@seqArr, $seq); } } #@seqArr = sort { $a->id() cmp $b->id() } @se...2919 days ago
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Tags
Linux Sort Commands for Bioinformatics
Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space efficiency GNU sort stands at the top. It can sort a 20Gb file with less than 2Gb memory. It is not trivial to implement so...Tags: Bioinformatics, Computational Biology, Linux, Sort, Example
3632 days ago
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Comments
Comment on "Far Manager Commands and Links !"
...F1- show / hide the left panel F2- show / hide right panel F3- sort by file name F4- sort by extension F5- sort by rec...F6- sort by size F7- do not sort F8- sort by creation time F9- sort by access time F10- sort by...945 days ago
Comment on "Nanopolis: polish a genome assembly"
...e draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtool...variants --consensus -o polished.{1}.vcf -w {1} -r reads.fa -b reads.sorted.bam -g draft.fa -t 4 --min-...2104 days ago
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