Results for "Stats"
Blogs
Computer simulation of genetic mechanism !!
...genome scans http://www.hapsample.org/ HAPGEN A simulator for the simulation of case control datasets at SNP markers https://mathgen.stats.ox.ac.uk/genetics_software/ha...2975 days ago
Tools and Method for Haplotype phasing !
...oft/gh/ The Genome Analysis Toolkit: http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit IMPUTE2: https://mathgen.stats.ox.ac.uk/impute/impute_v2.htm...1338 days ago
- +2 more Blogs
Bookmarks
- Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts
3360 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but w...
2747 days ago
- +5 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 2
...Example Perl module for extending the cPanel API cosimo/perl5-net-statsd - Net::Statsd is a Perl client for Etsy's...fs snapshots, Web-Frontend, Statistics, History-Merger) NoodlesNZ/statsd-perl-mysql - MySQL stat...2494 days ago
Awesome perl frameworks, libraries and software - PART 3
...y-Bot - a RSS trawler and social media broadcaster PDLPorters/PDL-Stats - Statistics modules in...rials - Nginx Tutorials creaktive/rainbarf - CPU/RAM/battery stats chart bar for tmux (and GNU s...2494 days ago
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Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...ate regions or genome scans http://www.hapsample.org/HAPGEN A simulator for the simulation of case control datasets at SNP markers https://mathgen.stats.ox.ac.uk/genetics_software/ha...3737 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ically tailored to Oxford Nanopore Reads, written in Python; Package comes with 3 programs, marginAlign, marginCaller (calls SNVs), marginStats (computes qc stats on sam files) Input: SAM Ou...2909 days ago
- +3 more Top-level pages
Wire posts
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...io::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->...gnin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...lnobj->each_seq; my $results = $stats->calc_KaKs_pair($alnobj, $seq...t "\n\n"; } my $result3 = $stats->calc_average_KaKs($alnobj, 1...2649 days ago
- ...AOSW_8_2_C1CBGACXX.IND11_noribo_clean.fastq --pairs_together --PARALLEL_STATS Converting input files. (b...s/trinityrnaseq-Trinity-v2.6.6/util/..//Inchworm/bin/fastaToKmerCoverageStats --reads left.fa --kmers jelly...
2127 days ago
- +10 more Bio-Scripts
Tags
- We are a bioinformatics research lab focused on developing novel methods and using them to study genome evolution, organization, and regulation. Our mission is to decode biomedical knowledge that is missed without rigorous statistical approaches. http://docpollard.org/ Tools http://docpo...
Tags: Katie, Pollard, Bioinformatics, method, genome, regulation, stats
1317 days ago
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...p.paf.gz > miniasm.gfa awk ’/^S/{print “>”$2”\n”$3}’ miniasm.gfa > miniasm.fasta assembly-stats ./miniasm.fasta dnadiff -p d...796 days ago
Comment on "R and Bioconductor Tutorial"
The illinois R tutorial http://math.illinoisstate.edu/dhkim/rstuff/rtutor.html The basic stats with R at http://ww2.coastal.edu/kingw/statistics/R-tutorials/3707 days ago
