3d-dna: 3D de novo assembly (3D DNA) pipeline
...uses tools and methods from Juicer (Durand & Shamim et al., Cell Systems, 2016) and Juicebox (Durand & Robinson et al., Cell Systems, 2016), as well as additiona...2323 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and e...dations for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017...2214 days ago
2087 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more general...1948 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants w...odel. More at https://kevlar.readthedocs.io/en/latest/ https://www.cell.com/iscience/pdf/S2589-0042(1...1563 days ago
1547 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence...ingle-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA-seq (strand-specific/agno...1400 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorith...actors that drive gene changes in 4 settings: 1) A cell line expressing or lacking si...ngle TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons di...1259 days ago
1202 days ago
673 days ago