STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability change (ΔΔG) of protein m...y of features at different levels of sequence and structure properties. The unique charac...bination of sequence profiles with low-resolution structure...2064 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach w...nal cDNA/EST and/or protein sequences are used to predict gene structures...2041 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences,...a network. A very efficient algorithm, based on the Disjoint Sets Data Structure,...1971 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.c...sts of four sub packages: sequence, structure, databases, and application. The sequence and structure modules serve for the an...ocuses on working with sequence and structure...1966 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modific...lular mechanism that can pack and re-pack chromatin. By making the chromatin structure...1956 days ago
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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multipl...n-functional sequences (pseudogenes) without disrupting the underlying codon structure....1904 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the genetic clustering program structure or by other similar prog...icients in the same form as used in "Genetic structure...1869 days ago
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