CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the artic...1556 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the...liver the analytical framework as a robust and reliable containerized workflow system,...1502 days ago
Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepared library. Please see Achieving Success with De Novo Assembly and System...1450 days ago
1365 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. Fo...1240 days ago
Introduction to Bioinformatics and Computational Biology
This is the course material for STAT115/215 BIO/BST282 at Harvard University. Xiaole Shirley Liu (lead instructor)Joshua StarmerMartin HembergTing WangFeng Yue Ming T...1211 days ago
1230 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressin...linked with libz v1.2.7 for Linux x86_64 system. If you could not run it (whi...or you want to build a version optimized for your system,...1193 days ago
975 days ago
Understanding pango networks !
In the vast majority of instances it is expected that Pango lineage names and designati...https://www.pango.network/the-pango-nomenclature-system/statement-of-nomenclature-rules/ https://www.pango.network/how-does-the-system-...946 days ago