Liftoff: An accurate GFF3/GTF lift over pipeline
Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require...1241 days ago
The Breeding API (BrAPI) project
The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RESTful web service API specification for communicat...1223 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ dir...1187 days ago
Public Databases for Bioinformatics !
...HM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_29/gencode.v29.annotation.gtf.gz.1147 days ago
CoronaVIR: Computational Resources on Novel Coronavirus (SARS-CoV-2 or COVID-19)
...s and drugs for the COVID-19. The information is collected from various available resources.Cite: Patiyal, Sumeet, et al. “A Web-based Platform on COVID-19 to Maintain Pr...1113 days ago
LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
...(Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoReTTA exploits a refere...1055 days ago
Calling variants in non-diploid systems
...main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true low frequency v...1052 days ago
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PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...857 days ago