ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...sp;Experiments in which a limited number of species are defined ahead of time, such as those involving Pati...arches: Experiments in which the organisms are unspecified ahead of time or involve samples of high ta...1516 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...lso been provided, where the example script files can be updated to suit one’s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build so...1455 days ago
1425 days ago
The wavefront alignment (WFA) algorithm
...etween the sequences to accelerate the alignment process. As opposed to traditional dynamic programming algorithms that run in quadratic time, the WFA runs in time O(ns), proportional to the re...1414 days ago
parallelLastz: Lastz with multi-threads support.
...single computer with multiple core processors. When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equa...1359 days ago
Ventoy: an open source tool to create bootable USB drive
...don't need to format the disk over and over, you just need to copy the image files to the USB drive and boot it. You can copy many image files at a time and ventoy will give you a bo...1048 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redun...990 days ago
Applying MinHash to cluster RNAseq samples
A kmer blog worth spending time on990 days ago
949 days ago
Fix rewritable error of ELGG !
...ave an unlimited number of attached rule conditions, to allow you to rewrite URL based on server variables, environment variables, HTTP headers, or time stamps. mod_rewrite ope...909 days ago