String graph based genome assembly software and tools !
...ch called ‘string graph’. Following are the genome assembly tools based on string graph: 1.SG...ences are then extended to contigs. BASE is a practically efficient tool for constructing contig, with...2322 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...raph (DBG), and string graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/lh3/bwa G...b.com/jts/nanopolish nanoporeVariant-detection tool for nanopore sequence datahtt...2314 days ago
Install ImageMagick from Unix Source
...ow to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_f...dependent libraries... pass_allchecking for dlltool... nochecking how to associat...ng depfiles commandsconfig.status: executing libtool commandsconfig.status: execut...2139 days ago
List of motif discovery tools !
...ction (ASC) database -- A new tool to assign functions to protei...roteins. EXPASY Proteome Tools Collection Use a collection...d kinases. MeMo -- a web tool for prediction of protein met...ple motifs. SDPpred -- A Tool for Prediction of Amino Acid...1987 days ago
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Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly...://github.com/lh3/miniasm 4 PBJelly scaffolding tool https://sourceforge.net/projects/pb-jelly/ 5 ARCS scaffolding tool https://github.com/bcgsc/arcs...1338 days ago
Bioinformatics tools for telomere to telomere assembly !
...ce variants (Yuanyuan Cheng @Yuanyuan929)● svpack – tools for filtering, comparing, an...riant (SV) calls in VCF format (Aaron Wenger)● JumboDB – tool for de Bruijn graph construct...985 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...contigs you just created: They're the draft Contigs. Any mis-assemblies can occur. Mis-assembly checking and assembly metric tools:QUAST - Quality assessment tool for genome assembly http://bi...1198 days ago
Frequently used bioinformatics tools for viral genome analysis !
...a. URL http://www.R-project.org/. RATT: RATT: Rapid Annotation Transfer Tool. Otto, T. D., Dillon, G. P.,...Degrave, W. S. & Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map...1041 days ago
Useful Bioinformatics Analysis Tools !
...., Debudaj-Grabysz, A., Grabowski, Sz., Disk-based k-mer counting on a PC, BMC Bioinformatics, 2013; 14():Article no. 160, Kmer-db Tool for estimation of evolutionar...857 days ago