Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...Python) https://sourceforge.net/projects/lmat/ stringMLST k-mer-based tool for MLST directly from the ge.../page/software/stringMLST Taxonomer k-mer-based ultrafast metagenomics tool for assigning taxonomy to seq...2365 days ago
Single Cell RNAseq data analysis tutorial !!
...-Seq data http://biorxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing...ll trajectories https://github.com/jw156605/SLICER SinQC: A Method and Tool to Control Single-cell RNA-se...2345 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...dash; Standalone command line tool, takes just a few minutes per...BI environment. BEACON (automated tool for Bacterial GEnome Annotati...ion) is KEGG's internal annotation tool for K number assignment of KE...2326 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ing references indexed with BBSplit, as they contain additional information regarding which sequences came from which reference file. BBSplit is a tool that bins reads by mapping to...2308 days ago
2299 days ago
List of visualization tools for network biology
...t the species and/or population level. Few tools published in BMC are listed...phi.org Igraph Collection of network analysis tools with the emphasis on efficie...xternal data http://tinyurl.com/yEdGraph/ Web tools for network analysis APID&n...2282 days ago
List of visualization tools for genome alignments
...are the list of genome alignment visualization tools, which could be useful for a...xplorer BamView Genome browser and annotation tool that allows visualization of...DNannotator.htm JVM Java Visual Mapping tool for NGS reads http://www.spr...2278 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a v...NA-Seq workflow that supports large scale RNA-Seq data analysis too. The tool also supports biological cont...2258 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...r the longer term, foreign DNA may become “domesticated” in the recipient genome and provide novel function. Following are the popular tool to detect HGT in genomes: T-...844 days ago
Some useful Bioinformatics links
...gigabaseorgigabyte.wordpress.com/2017/06/01/example-gallery-of-nanoplot/ Tool documentation https://broadi...ly? - SEQanswers http://seqanswers.com/forums/showthread.php?t=26721 samtools(1) manual page http://www.h...2235 days ago