Comment on "List of gene ontology software and tools"
...n of semantic similarity between genes and proteins based on GO annotations. An R script for TopoICSim is available at http://bigr.medisin.ntnu.no/tools/TopoICSim.R. More at ht...2846 days ago
Comment on "List of gene ontology software and tools"
Thanks for such a useful list of GO tools. I found this new tool interesting http://www.funrich.org/ . FunRich is a stand-alone software tool used mainly for functional enr...2909 days ago
Comment on "List of gene ontology software and tools"
Thanks for such a useful list of tools for GO study. I found FUNC: a package for detecting significant associations between gene sets and ontological annotations (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800870/) also very useful.2988 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such a useful list of synteny identification tools. If anyone interested to analyze synteny at the protein level, they can try this tool https://github.com/thiesgehrmann/proteny2998 days ago
Comment on "Software packages for next gen sequence analysis"
Broad Institute listed many new tools for genome assembly, please all at http://www.broadinstitute.org/scientific-community/software?criteria=Assembly3031 days ago
3050 days ago
Comment on "List of gene ontology software and tools"
Thanks for the useful collection of GO tools. I found FuncAssociate also very useful. It is a web-based tool to help researchers use Gene Ontology attributes to characterize large se...3195 days ago
Comment on "Software packages for next gen sequence analysis"
...l and related papers at http://www.plosone.org/browse/Sequence+assembly+tools?startPage=53&filterAuthor...mattedQuery=*%3A*&sortKey=&filterSubjects=Sequence%20assembly%20tools&volume=&3256 days ago
Comment on "Does anyone have Nanopore latest updates?"
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION http://biorxiv.org/content/early/2015/05/20/019281.full-text.pdf+html Additional tools for analyzing Oxford Nanopore minION data by John Urban https://github.com/JohnUrban/poreminion3285 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
The recent article on Nature explain it better ... R becoming the most popular language amongst biological researchers http://www.nature.com/news/programming-tools-adventures-with-r-1.16609?3422 days ago