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GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...al bit-vector and Gotoh, anchored). Overlapping of reads for de novo assembly. Transcriptome mapping through internal construction of a transcriptome from a given genomic referenc...2536 days ago
2333 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...from GENCODE v30) to lncRNAs from other species identified by PLAR. Available here. Species Assembly Code Transcriptome lncRNAs Protein-cod...861 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts...2201 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...it is feasible to study entire transcriptomes of non-model organisms. Whil...ically designed for performing transcriptome assembly from high-throughput...iversity researchers develop a transcriptome assembly algorithm that recov...fficient algorithm for de novo transcriptome assembly of non-model organis...2145 days ago