10 NGS services companies around the globe !
...ed (re)-sequencing, human sample sequencing, transcriptomes, metagenomes, regulomes, pre...lines and workflows, compute resources, data analysis reports, and case studies. GA...nstruction, genome research, and bioservices analysis system consulting services. M...1259 days ago
Bioinformatics tools for telomere to telomere assembly !
...gedüs @rocioadh)● tama (Transcriptome Annotation by Modular Algorit...processing Iso-Seq data and other long-read transcriptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio Amplicon Analysis) – separates complex mi...991 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-....org/cms/research/projects/annotation-service/ Frequent command use for the analysis are at: https://bioinformati...1204 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1155 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015...1047 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fast...t annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment,...877 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using k-...863 days ago
List of comparative genomics resources !
...d mouse View AREs in the human transcriptome and study the comparative gen...Conduct comparative biometric analysis of chromosomes of different o...agenomes A data management and analysis system for metagenomes I...f phylogenetic and evolutionary analysis. PhyloPat -- the phyloge...677 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org...544 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?...cle/pii/S2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdown, Git...utational workflows is automated using continuous analysis https://www.nature.com/a...541 days ago