Results for "Translation Bioinformatics"
Bio-Scripts
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my...A is $rcDNA\n"; #did it work? #find the reverse complement of $DNA using translation op...2924 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENB...g: $!"; # Flag for multiline translation; 1 means translation "in progress" $trans = 0;...ds_end\n"; } elsif (/(\/translation=")(.*)/) { # protein produc...print "Problems: end of translation pr...2924 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use strict; use Carp; use overload '""'...my ($max,$pos,$frame); foreach (-3..-1,1..3) { my $translation = $self->translate($_); while ($translation=~/...2188 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump [options] IN...or SOLiD),"cskey" may be specified for translation...
2133 days ago
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd runc Reading package lists... Done Building dependency tree Read...1520 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@ji...#you can find the test script web.pl at https://bioinformaticsonline.com/snippets/view/41440...-MT:~/Downloads/autoConTAMPR/bin$ ./web https://bioinformaticsonline.com #It return thi...1518 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/w...1210 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if...1053 days ago
- #R is a feature rich interpretive programming language originally released in 1995. It is heavily used in the bioinformatics community largely due to nume...
830 days ago
Perl script for six frame translation !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; # Path to your input nucle...$seqio->next_seq; # Step 2: Perform six-frame translation my @frames = (1, 2, 3, -1, -..."Reverse"; print "Frame $frame_type $frame Translation:\n...101 days ago
