InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
...ile preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. T...670 days ago
OneZoom tree of life explorer...
An interactive map of the evolutionary links between all living things known to science. Discover your favourites, see which species are under threat, and be amazed by the diversity of life on earth.534 days ago
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
MitoHiFi v3.2 is a python pipeline distributed under MIT License ! MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project (DToL) https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05385-y237 days ago
PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
...mitochondrial genome assemblies, nuclear ribosomal DNAs (NTS+ETS+18S+ITS1+5.8S+ITS2+28S), alignments of gene and intergenic regions, and a species tree. It is designed to be a high...236 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...nts can be generated from multi-copy gene families. For phylogenetic inference, users can choose a supermatrix approach and/or gene tree inference followed by supertree reconstruction. Users can spe...68 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
...mitochondrial genome assemblies, nuclear ribosomal DNAs (NTS+ETS+18S+ITS1+5.8S+ITS2+28S), alignments of gene and intergenic regions, and a species tree. It is designed to be a high...68 days ago
ExRec: Exclusion of Recombined DNA
...onvert the recombination-filtered data into single-locus NEXUS or PHYLIP files. The ExRec package can thus facilitate species delimitation, species tree, and historical demography st...32 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
...ds and enables the construction of phylogenetic trees based on the resultant Jacca...ods. We used MIKE to reconstruct a phylogenetic tree, incorporating 238 yeast, 303...ving itself as a powerful tool for phylogenetic tree construction.21 days ago