genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows th...t, automatic annotations for genomes, based on gene names Add a user-generated tree...1965 days ago
1935 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more de.... The only input requierement for UPhO is a tree (or trees) in Newick format i...ustom delimiters can be defined. Examples of trees...1932 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML&nb...elihoods with similar computing time IQ-TREE found higher likelihoods betw...of obtaining higher likelihoods with IQ-TREE...1897 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Result files include the resulting gene sequences, true tree...1651 days ago
1615 days ago
1560 days ago
3D de novo assembly (3D DNA) pipeline
For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aiden...1548 days ago
1543 days ago
1543 days ago