Results for "Trim"
Bio-Scripts
Perl script to extract fasta sequence by matching name/ids !!
#!/usr/bin/perl use strict; use warnings; use Text::Trim qw(trim); #Usage perl extractSeqbyID.pl ids.txt...pen OUT, ">$out" or die; open FILE, "$fasta" or die; while () { trim($_); s/>//g; my ($i...2878 days ago
Installing Porechop on Ubuntu !
...[--require_two_barcodes] [--untrimmed] [--discard_unassigned]...] [--end_size END_SIZE] [--min_trim_size MIN_TRIM_SIZE]...(default: 4) --extra_end_trim EXTRA_END_TRIM...2109 days ago
Perl script to delete the adjacent repeats !
...s/(.)\1/$1/g #Alternatively, if you want to ignore case when comparing, you could use: $string =~ s/(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down...1553 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...format -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o g++ -shared -L/usr/lib/R/l...rmat-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_trim.cpp -o stri_search_class_trim...1553 days ago
Tadpole is 250x faster than SPADes assembler !
...(minc) Do not write contigs shorter than this. mincoverage=1 (mincov) Do not write contigs with average coverage below this. trimends=0 (trim) Trim contig ends by this muc...979 days ago
Trim the reads in loop using Trimmomatic !
...base=$(basename ${infile} _1.fastq.gz) trimmomatic PE ${infile} ${base}_2.fastq.gz \ ${base}_1.trim.fastq.gz ${base}_1un.trim.fas...${base}_2.trim.fastq.gz ${base}_2un.trim.fastq.gz \ S...958 days ago
