Results for "Trinity"
Blogs
Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
...eir time at one of the partner universities. Read more...9. TRINITY COLLEGE DUBLIN - Ireland...nities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian...2551 days ago
Installing Perl environment on Linux
.... Remember to install Perl in supporting multithreading (with option -Dusethreads), which is important for many NGS analysis packages (e.g. Trinity). In this setting, you can us...2320 days ago
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Bookmarks
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute an...of transcriptomes from RNA-seq data. Trinity combines three independent so...cess large volumes of RNA-seq reads. Trinity partitions the sequence data...nes. More at https://github.com/trinityrnaseq/trinityrnaseq/wiki ......2964 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...the assembly and for the mapping of the reads. A full documentation on the pipeline can be found here. we recommend Trinity for the assembly. Trinity components should be merged w...2166 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ficient merging of multiple assemblies. It was tested on human and mouse RNA-seq data and is shown to improve significantly on the transABySS and Trinity de novo SOPRA 1.4.6 &n...2685 days ago
Awesome perl frameworks, libraries and software - PART 4
...es - Method and function declarations with signatures, no source filter yogan/cope - A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity RNA-Seq...2493 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...me assembly from RNA-Seq data without a reference genome. Grabherr et al, Nature Biotechnology 29:644 - 652, 2011. PubMed [The software is called Trinity, and is available on Sourcefo...3778 days ago
Genome Assembly Tools and Software - PART1 !!
...complex genomes. TriMetAss 1.2 – The Trinity-based Iterative Metagenomics...Assembler TriMetAss is an extension to the Trinity software [1], which can assem...sets of any kinds of genomic sequences. Trinity 2.1.1 – RNA-Seq De novo...2685 days ago
Wire posts
Opportunity posts
- ...BWA, Bowtie, SAM tools, BEDTools, MACS, Galaxy, FastQC, Bismark, MEDIPS, Tophat, Cufflinks, AvadisNGS, CLC Genomics Workbench, Galaxy, BaseSpace, Trinity Statistics: Microsoft Excel a...
3164 days ago
Video
'What is Life? A 21st Century Perspective' by Dr Craig Venter
...ntury science was celebrated and reinterpreted for the 21st century in Trinity College Dublin on 12 July 201...', under the auspices of the Dublin Institute for Advanced Studies, in Trinity College Dublin. The lecture p...3904 days ago
Bio-Scripts
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250...worm_target: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_...home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out_dir/read_p...MD: mkdir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_...
2126 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-...commands with explanations ➜ BorisTrinityAssembly /home/urbe/Tools/tran...3-linux-x86_64/transrate --assembly=Trinity.fasta --output=transrateSTAT...ntig to /media/urbe/MyPassport/BorisTrinityAssembly/transrateSTAT/Trinity...
2122 days ago
Tags
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied seq...Tags: Bioinformatics, NGS, RNA-seq, Assembly, Trinity, Illumina
2964 days ago
Comments
Comment on "Running Trinity on RNA-seq !"
...ther data explorations. Perform differential expression analysis. Trinity provides direct support for s...ate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for...2122 days ago
