BOL: Results for "Trinity"

Results for "Trinity"

- Priya Singh@priyasingh
Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
...eir time at one of the partner universities. Read more...9. TRINITY COLLEGE DUBLIN - Ireland...nities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian...
2552 days ago
- biogeek@biogeek
Installing Perl environment on Linux
.... Remember to install Perl in supporting multithreading (with option -Dusethreads), which is important for many NGS analysis packages (e.g. Trinity). In this setting, you can us...
2322 days ago
+2 more Blogs

- Surabhi Chaudhary@surabhi
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute an...of transcriptomes from RNA-seq data. Trinity combines three independent so...cess large volumes of RNA-seq reads. Trinity partitions the sequence data...nes. More at https://github.com/trinityrnaseq/trinityrnaseq/wiki ......
2965 days ago
- Surabhi Chaudhary@surabhi
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...the assembly and for the mapping of the reads. A full documentation on the pipeline can be found here. we recommend Trinity for the assembly. Trinity components should be merged w...
2167 days ago

- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...me assembly from RNA-Seq data without a reference genome. Grabherr et al, Nature Biotechnology 29:644 - 652, 2011. PubMed [The software is called Trinity, and is available on Sourcefo...
3780 days ago
- Jit@jit.aber
Genome Assembly Tools and Software - PART1 !!
...complex genomes. TriMetAss 1.2 – The Trinity-based Iterative Metagenomics...Assembler TriMetAss is an extension to the Trinity software [1], which can assem...sets of any kinds of genomic sequences. Trinity 2.1.1 – RNA-Seq De novo...
2686 days ago

- Rahul Nayak@rahul
ATM, ATR, and DNA-PK: The Trinity at the Heart of the #DNA #Damage Response https://www.sciencedirect.com/science/article/pii/S1097276517303544
1936 days ago

- Nidhi Rajput@nidhi
Bioinformatics WalkIn at NII
...BWA, Bowtie, SAM tools, BEDTools, MACS, Galaxy, FastQC, Bismark, MEDIPS, Tophat, Cufflinks, AvadisNGS, CLC Genomics Workbench, Galaxy, BaseSpace, Trinity Statistics: Microsoft Excel a...
3166 days ago

- Jitendra Narayan@admin
'What is Life? A 21st Century Perspective' by Dr Craig Venter
...ntury science was celebrated and reinterpreted for the 21st century in Trinity College Dublin on 12 July 201...', under the auspices of the Dublin Institute for Advanced Studies, in Trinity College Dublin. The lecture p...
3905 days ago

- Jit@jit.aber
Running Trinity on RNA-seq !
➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250...worm_target: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_...home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out_dir/read_p...MD: mkdir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_...
2127 days ago
- Jit@jit.aber
Running Transrate !
➜ BorisTrinityAssembly /home/urbe/Tools/transrate-...commands with explanations ➜ BorisTrinityAssembly /home/urbe/Tools/tran...3-linux-x86_64/transrate --assembly=Trinity.fasta --output=transrateSTAT...ntig to /media/urbe/MyPassport/BorisTrinityAssembly/transrateSTAT/Trinity...
2123 days ago

- Jit@jit.aber
Comment on "Running Trinity on RNA-seq !"
...ther data explorations. Perform differential expression analysis. Trinity provides direct support for s...ate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for...
2123 days ago