BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a...1969 days ago
1949 days ago
Genome assembly forensics: finding the elusive mis-assembly
...implementation in our automated validation pipeline, called amosvalidate. We demonstrate the application of our pipeline in both bacterial and eukaryotic genome assemblies, and...1922 days ago
RepeatModeler2: automated genomic discovery of transposable element families
RepeatModeler2 represents a valuable addition to the genome annotation toolkit that will enhance the identification and study of TEs in eukaryotic genome sequences. RepeatModeler2 i...1612 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based me...1556 days ago
Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1554 days ago
Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broa...1531 days ago
1524 days ago
Predict Gene Ontology with sequences !
...ce for functional annotation of prokaryotic and eukaryotic proteins of unknown fu...R2 processes bacterial proteomes in minutes and eukaryotic proteomes in an hour....IterPro is for the beginners https://www.ebi.ac.uk/interpro/ You can find other...1394 days ago
1357 days ago