molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulat...ration of tautomers, molecule fragmentation, calculation of various molecular properties needed in QSAR, molecular m...1934 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the genetic clustering progra...you register) [Download manual] [Download software note from Molecular E...1870 days ago
simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmar...r any organisms (including human). The simplicity and versatility of simuG make it a unique gene...1622 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic...ts for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support valu...1612 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw s...in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in h...1561 days ago
1549 days ago
RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel followed by a final bin-stitching step.1467 days ago
1420 days ago
GROMACS: a versatile package to perform molecular dynamics
GROMACS is a versatile package to perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with...leic acids. The WeNMR GROMACS web portal combines the versatility of this molecular d...1369 days ago
1363 days ago