1944 days ago
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologo...1938 days ago
1796 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...neral Public License from https://github.com/mourisl/Rcorrector/. Usage: perl run_rcorrector.pl [OPTI...mers; does not affect the correctness of program but affects the memory usage (default: 100000000) -stdou...1564 days ago
Juicebox: Visualization and analysis software for Hi-C data
...load Juicebox here, or use Juicebox on the web. Detailed documentation is available on the wiki. Instructions below pertain primarily to usage of command line tools and the...1548 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...ntig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formated appropriately (see Usage).1460 days ago
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682 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to phase gene copies into polyploid subgenomes. The tutorial is an abbreviated version of a soon-to-be published paper in...349 days ago