RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a user can easily tailor the run to their project needs. The algorithm is mea...1336 days ago
1220 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
...version of libc++ or libz library) or you want to build a version optimized for your system, you can re-compile the programs: user@linux$ make clean &&...1191 days ago
FiNGS: Filters for Next Generation Sequencing
...on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (inclu...and use, with filters and thresholds that are fully configurable by the user. It ingests and emits standar...1176 days ago
LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoR...1060 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the user’s computer/browser. VCF2PopTree is compatible with all population browsers...875 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
...o analyze the genetic environment of genes. The user can select one or several tax...ence protein(s). Genomes and plasmids (based on user choice) will be downloaded fr...Alternatively, custom genomes can be provided. User selected stretches (20kbp by...872 days ago
GToTree: a user-friendly workflow for phylogenomics
GToTree is a user-friendly workflow for phylogenomics intended to give more researchers the capability to create phylogenomic trees. The open-access Bioinformatics Journal publication is available here, and documentation and examples can be found at the wiki here.815 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the su...813 days ago
407 days ago