SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
...n operating systems. Furthermore, the complicated installation process of required packages and running environments can render these programs less user friendly.1945 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...the source code for the shiny wrapper. A Python package called py-upset to create UpSet plots has been created by GitHub user ImSoErgodic....1936 days ago
DISTRUCT: a program for the graphical display of population structure
...8: 2381-2385 (2002). Various options enable the user to control left-to-right prin...populations, bottom-to-top printing order of clusers, colors, and other graphical...sp;to Noah Rosenberg. October 15, 2014 — Users of Distruct may also find&nb...1881 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
...hage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-specified set of phage genome...1829 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1826 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1746 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
...produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the to...1244 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or public ser...1562 days ago
1562 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Cur...1556 days ago