shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams developed using the R Shiny package. To create single-genome plot by ali...1540 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided by the...1525 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...on and quantification of bottom-up proteomics data. It is designed to be user-friendly, and has been optimi...ete documentation at proteoclade.readthedocs.io for installation, a user's guide, and examples. https...1521 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
...terns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version...or, if you want to get the latest development version: pip3 install --user -e git+https://github.com/kos...1517 days ago
tinycov: standalone command line utility written in python to plot coverage from a BAM file
...f a BAM file quickly. This software was inspired by Matt Edwards' genome coverage plotter. To install the stable version: pip3 install --user tinycov To install the devel...1517 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in databases such as DrugBank and STITCH. These data usually reflect obs...1508 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
...data. Then they are fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the package, we provided a compiled bwa, so the user needn't to install bwa. LR_Ga...1464 days ago
GROMACS: a versatile package to perform molecular dynamics
...nable you to perform many simulations from the comfort of your internet browser anywhere in the world. The server is furthermore aimed to provide a user friendly and efficient MD exp...1380 days ago
1374 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targe...1370 days ago