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  • Visualization of protein sequence features using JavaScript and SVG with pViz.js http://bioinformatics.oxfordjournals.org/content/early/2014/08/21/bioinformatics.btu567.short? #Protein #Visualize #Jav

    3557 days ago

  • sudo apt-get install libgd-svg-perl to install GD::SVG #Perl #Linux #Install #Graph #Plot

    2630 days ago

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  • VG: variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

    Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which are labeled by sequences and ids edges, which connect two nodes via either of their respective ends paths, describe genomes,...

    Tags: VG, variation, graph, structures, interchange, formats, alignment, genotyping, variant, calling, methods, snp

    1572 days ago

  • Collection of Graph Visualization tools !

    Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this reference are hard to observe and describe in a coherent way. Variation and sequence are separated.   https://fu...

    Tags: graph, map, vg, plot

    479 days ago

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