Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely us...gle-cell RNA-seq data with Bioconductor SCell: single-cell RNA-seq analysis software https://github.com/diazlab/S...2364 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau–...2354 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsy...lity of genome assemblies created via an assembly software. PAGIT compiled four tools: (...sequences and; (iv) RATT for help annotation. The software was mainly created to analyze...2345 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages&mda...uding those listed here) supports PSGI. Several deployment mechanisms exist to meet various...2334 days ago
List of visualization tools for network biology
...inetics stochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin...ttps://www.broadinstitute.org/software/spectralnet Tulip Ena...visualization, integration of various data types, network simulation...2301 days ago
List of visualization tools for genome alignments
...www.bcgsc.ca/platform/bioinfo/software/abyss-explorer BamView Genome bro...://www.sanger.ac.uk/resources/software/artemis/ DNannotator ...of a reference genome http://bioinformatics.zj.cn/magicviewer/ Map....edu/star/browser SVA Software for annotating and visualizin...2297 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-...2293 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure an...ITE http://jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.jane...par http://www.eecs.wsu.edu/~ananth/software.htm MAK http://wesslerclust...TFinder http://bioinf.dimi.uniud.it/software/software/smartfinder Tandem...2287 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-cel...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy wi...sp;http://www.bestprogramminglanguagefor.me/why-learn-python and http://bioinfor...2268 days ago